In the transdisciplinary course students acquire extract of the knowledge, developing a holistic view of the fundamental processes in nature in the framework of physics, environmental sciences. At the same time students acquire comprehension on digital modelling of the natural science processes and interconnections – graphics, diagrams, multimedia models and video explanations. Students will acquire skills of models’ practical design. Course activities will develop students’ comprehension on e-pedagogy and competencies of the educational research of pedagogical efficiency of the natural science models, to assess and systematize models according to pedagogical effectiveness. Students will gain experience of the Massive Online Open Course (MOOC) type Learning management systems (LMS) design.